High throughput tomo
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Papers Published within this Project:
2013
Helical optical projection tomography
A Arranz, D Dong, S Zhu, M Rudin, C Tsatsanis, J Tian,
J Ripoll
Optics express
21 (22), 25912-25925, 2013
2014
Steady-state total diffuse reflectance with an exponential decaying source
P Symvoulidis, KM Jentoft, P Beatriz Garcia-Allende, J Glatz,
J Ripoll
, .and V. Ntziachristos
Optics letters
39 (13), 3919-3922, 2014
Plenoptic projection fluorescence tomography
I Iglesias,
J Ripoll
Optics expres
s 22 (19), 23215-23225, 2014
Vertically scanned laser sheet microscopy
D Dong, A Arranz, S Zhu, Y Yang, L Shi, J Wang, C Shen, J Tian,
J Ripoll
Journal of biomedical optics
19 (10), 106001-106001, 2014
In-vivo Optical Tomography of Small Scattering Specimens: time-lapse 3D imaging of the head eversion process in Drosophila melanogaster
A Arranz, D Dong, S Zhu, C Savakis, J Tian,
J Ripoll
Scientific reports 4, 2014
2015
A Customized Light Sheet Microscope to Measure Spatio-Temporal Protein Dynamics in Small Model Organisms
M Rieckher, I Kyparissidis-Kokkinidis, A Zacharopoulos, G Kourmoulakis, N.Tavernarakis,
J. Ripoll
and G. Zacharakis,
Plos One 10(5)
: e0127869, 2015
Unleashing Optics and Optoacoustics for Developmental Biology
Ripoll, J., Koberstein-Schwarz, B., & Ntziachristos, V. (2015).
Trends in Biotechnology
,
33
(11), 679–691.
Advances in optical imaging for pharmacological studies
.
Arranz, A., & Ripoll, J. (2015).
Frontiers in Pharmacology
,
6
, 189.
2016
Dynamic Measurement of Tumor Vascular Permeability and Perfusion using a Hybrid System for Simultaneous Magnetic Resonance and Fluorescence Imaging
Ren, W., Elmer, A., Buehlmann, D., Augath, M.-A., Vats, D., Ripoll, J., & Rudin, M. (2016). .
Molecular Imaging and Biology
,
18
(2), 191–200.
pMHC affinity controls duration of CD8+ T cell–DC interactions and imprints timing of effector differentiation versus expansion.
Ozga, A. J., Moalli, F., Abe, J., Swoger, J., Sharpe, J., Zehn, D., … Stein, J. V. (2016).
Journal of Experimental Medicine
,
213
(12).
Stripe artifact elimination based on non-subsampled contourlet transform for light sheet fluorescence microscopy.
Liang, X., Zang, Y., Dong, D., Zhang, L., Fang, M., Yang, X., … Tian, J. (2016).
Journal of Biomedical Optics
,
21
(10), 106005.
Polarization-sensitive optical projection tomography for muscle fiber imaging.
Fang, M., Dong, D., Zeng, C., Liang, X., Yang, X., Arranz, A., … Tian, J. (2016).
Scientific Reports
,
6
, 19241.
3D imaging in CUBIC-cleared mouse heart tissue: going deeper.
Nehrhoff, I., Bocancea, D., Vaquero, J., Vaquero, J. J., Ripoll, J., Desco, M., & Gómez-Gaviro, M. V. (2016).
Biomedical Optics Express
,
7
(9), 3716.
Light sheet fluorescence microscopy for in situ cell interaction analysis in mouse lymph nodes.
Abe, J., Ozga, A. J., Swoger, J., Sharpe, J., Ripoll, J., & Stein, J. V. (2016).
Journal of Immunological Methods
,
431
, 1–10.
Fluorescence Diffusion in the presence of Optically Clear Tissues in a Mouse Head model.
Ancora, D., Zacharopoulos, A., Ripoll, J., & Zacharakis, G. (2017).
IEEE Transactions on Medical Imaging
, 1–1.
2017
Photoswitching-Enabled Contrast Enhancement in Light Sheet Fluorescence Microscopy.
Vettenburg, T., Corral, A., Rodríguez-Pulido, A., Flors, C., & Ripoll, J. (2017).
ACS Photonics
,
4
(3), 424–428.
Optimized CUBIC protocol for 3D imaging of chicken embryos at single-cell resolution.
Gómez-Gaviro, M. V., Balaban, E., Bocancea, D., Lorrio, M. T., Pompeiano, M., Desco, M., Ripoll, & J, Vaquero, J. J. (2017).
Development
,
Looking inside the heart: a see-through view of the vascular tree
Nehrhoff, I., Ripoll, J., Samaniego, R., Desco, M., & Gómez-Gaviro, M. V. (2017).
.
Biomedical Optics Express
,
8
(6), 3110.
Antigen Availability and DOCK2-Driven Motility Govern CD4+ T Cell Interactions with Dendritic Cells In Vivo
Ackerknecht, M., Gollmer, K., Germann, P., Ficht, X., Abe, J., Fukui, Y.,
Swoger
, J., R
ipoll
, J.,
Sharpe, J. &
Stein, J. V. (2017)..
The Journal of Immunology
.
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